Predict copies per cell

Predict copies per cell

Usage

pred_cpc(fc, ncc, dir, ref_cpc = 2, stroma_cpc = 2, digits = 0)

Arguments

fc

Fold change

ncc

Neoplastic cell content (0-100)

dir

Fold change direction, must be "gain" or "loss"

ref_cpc

Copies per cell for reference cohort

stroma_cpc

Copies per cell for patient stroma

digits

The number of decimal places to round to

Value

Copies per cell

Examples

pred_cpc(fc = 11, ncc = 65, dir = "gain")
#> [1] 33