Predict fold change from copies per cell
Usage
pred_fc(tumour_cpc, ncc, dir, ref_cpc = 2, stroma_cpc = 2, digits = 1)
Arguments
- tumour_cpc
Copies of gene locus per tumour cell
- ncc
Neoplastic cell content
- dir
Fold change direction, must be "gain" or "loss"
- ref_cpc
Copies of gene locus per reference cohort cell
- stroma_cpc
Copies of gene locus per stroma cell
- digits
Digits to round the fold change to
Value
The predicted fold change
Examples
pred_fc(tumour_cpc = 109, ncc = 26, dir = "gain")
#> [1] 14.9
